Combine balsamic vinegar and honey in a small pot.
Bring to a boil over high heat, stirring once or twice.
Reduce heat to medium-low and simmer gently for 10-15 minutes, stirring occasionally.
Simmer until the glaze coats the back of a spoon and falls slowly.
Pour the glaze into a small bowl and let it cool to room temperature.
Thread a bocconcini onto a toothpick.
Fold a basil leaf and thread it onto the toothpick next.
Slide a cherry tomato onto the end of the toothpick.
Repeat with remaining ingredients to make 12 skewers.
Arrange the skewers on a serving platter.
Sprinkle each skewer lightly with salt and pepper.
Drizzle the cooled balsamic glaze over the skewers or serve it on the side.
Serve immediately while the cheese is cool and the basil is fresh.